eng Oriental Scientific Publishing Company Biomedical and Pharmacology Journal 0974-6242 2020-06-25 13 2 1011 1019 10.13005/bpj/1970 34042 article Maysaa Abdul Razzaq Dhahi 1 Microbiology Department, College of Medicine, Al Nahtain University, Baghdad, Iraq Pyelonephritis-associated pili (Pap) fimbria considered as the main adhesive virulence factor that enable Escherichia coli(E. coli) to colonize in the urinary tract and resist the avoiding by the flow of urine. DNA adenine methyl-transferase gene (Dam) have a role in regulation of papE expression and in bacterial DNA repair system and it could be targeted by antibiotics. Sixty Four isolates of E. coli from urine specimens were obtained from hospitalized and out-patients suffering from signs and symptoms of UTI. These isolates were identified molecularly as uropathic E. coli (UPEC) by detection of papE  using PCR. Partial sequencing of pap E was done to study variation among isolates according this gene and its role in susceptibility to antibiotic. Also, Dam was detected using PCR. Detection of papE in E. coli strains revealed that 26/64(42.6%) were considered as UPEC. Analysis of nucleotide sequence changes from partial sequencing tree of pap E shown that there were three clads and UPEC included in clade B displayed the most nucleotide sequence changes. Dam was detected in 11/64 (17.1%) E. coli isolates. The study of multi-drug resistance(MDR) risk in association with the presence of pap E and Dam in UPEC revealed that Dam could be considered as etiological factored to developing MDR. In conclusion, Dam should be taken in consideration as one mechanism of MDR development in UPEC. https://biomedpharmajournal.org/vol13no2/sequencing-analysis-of-pyelonephritis-associated-pili-gene-of-uro-pathogenic-e-coli-isolated-in-from-patients-baghdad-iraq/ Escherichia Coli Multidrug Resistance Pap E Dam Urinary Tract Infection